PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P00550_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 182aa    MW: 20917.4 Da    PI: 10.0154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P00550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.6e-083987354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            r++  rE+ RRdr+N++f eL  +l +    + +K +K ++L+ A++ + +L
  GSMUA_Achr10P00550_001 39 RTKACREKLRRDRLNDRFRELCCVLDPG---KPPKADKLAVLRDATHLLIQL 87
                            57889****************9777777...99************9988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.2553687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1137102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.25E-53990No hitNo description
PfamPF000101.6E-54087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-1041109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MFLFPICTTN YISIGKDIKN IQVFFLFRRA RVESSAAPRT KACREKLRRD RLNDRFRELC  60
CVLDPGKPPK ADKLAVLRDA THLLIQLRVE AKKLKESNEA LQDAIKNLKA EKSELRDEKT  120
RLRCEKEQME QMLRGISFTG QSAAVPATND KTFAYMPICM WQWVPPAALD TSQDHVLRPP  180
VA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419715.11e-109PREDICTED: transcription factor ILR3-like
RefseqXP_009419716.11e-109PREDICTED: transcription factor ILR3-like
SwissprotQ9FH372e-55ILR3_ARATH; Transcription factor ILR3
TrEMBLM0RE821e-133M0RE82_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P00550_0011e-133(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93863136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-56bHLH family protein